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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47713701_47716044_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47713701 - 47716044
Intron Length:
2344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACACTG
5'SS Class:
major
3'SS Sequence:
TTCTTAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
WFTVRKLGKQWFNLNSLLMG
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
62.5
43.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.5
0.75
0.8
77.5
34.5
Minor 5ss
35.7
-1.6
3.2
47.4
48
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006002
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034148
47713224 - 47722173
8950
ENSAPLT00000023211
47711152 - 47722173
11022
ENSAPLT00000006264
47711161 - 47721553
10393