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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47713701_47718218_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47713701 - 47718218
Intron Length:
4518

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCCTGTCTG
5'SS Class:
major
3'SS Sequence:
TTCTTAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
MGTIFHWFNLNSLLMG
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.31
1.4
60
44.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.5
0.75
0.8
77.5
34.5
Minor 5ss
31.4
-2.1
3.9
45.8
42.5
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006002
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020841
47711161 - 47718236
7076