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Intron Name: Anas_platyrhynchos_platyrhynchos_5_47718000_47718542_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

47718000 - 47718542

Intron Length:

543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTT

5'SS Class:

strong_major

3'SS Sequence:

TCACGCTGAGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TCCCTCCCAATC

Flanking Amino Acid:

SSEEYRTFLQQPSVNMDDSG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

27.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

59.4

0.21

1.1

54.6

39.9

Minor 5ss

43.2

-0.7

3.3

64.8

46.5

Minor BPS

44.7

-0.4

1.8

52.03

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006002

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041301

47713224 - 47722173

8950

ENSAPLT00000036979

47713295 - 47722173

8879

ENSAPLT00000023211

47711152 - 47722173

11022

ENSAPLT00000006264

47711161 - 47721553

10393

ENSAPLT00000046789

47713295 - 47722173

8879