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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47726022_47726249_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47726022 - 47726249
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGTC
5'SS Class:
major
3'SS Sequence:
TTCCCCCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GATTACATAATA
Flanking Amino Acid:
ASSTPLFYFLRLVLSEIECL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
74.7
33.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
76.5
0.6
0.8
73.9
30
Minor 5ss
42.7
-0.8
3.2
60.6
44.5
Minor BPS
55.7
0.18
1.8
67.91
37.8

Associated Gene:

Gene:
CPSF2
Ensembl Gene ID:
ENSAPLG00000006330
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006614
47724695 - 47741210
16516