Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47726436_47727564_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47726436 - 47727564

Intron Length:

1129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTTCAGCAACT

Flanking Amino Acid:

FSMDIIDSLRKHVHQVDAVL

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.6

33.2

Major BPS

0.65

1.5

85.7

34.9

Major PPT

81.4

0.71

0.7

76.6

25.4

Minor 5ss

39.2

-1.2

2.8

51.8

Minor BPS

53.4

0.19

2.4

85.74

40.2

Associated Gene:

Gene:

CPSF2

Ensembl Gene ID:

ENSAPLG00000006330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006614

47724695 - 47741210

16516