About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47727922_47729468_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47727922 - 47729468
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGGTTTTTAAAA
Flanking Amino Acid:
LKFSQIVNLKGKGHGLSITP
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.8
0.92
0.6
88.2
21.6
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
59.8
0.3
1.4
63.17
37

Associated Gene:

Gene:
CPSF2
Ensembl Gene ID:
ENSAPLG00000006330
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006614
47724695 - 47741210
16516