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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47729599_47730664_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47729599 - 47730664
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
CTTTTTTCCACA
Flanking Amino Acid:
YAVDFNHKREIHLNGCSLEM
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
87.7
0.85
0.6
83.6
24.8
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
49.4
-0
2
66.33
40.9

Associated Gene:

Gene:
CPSF2
Ensembl Gene ID:
ENSAPLG00000006330
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006614
47724695 - 47741210
16516