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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47733403_47733718_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47733403 - 47733718
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
AATGCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAA
U12 Branch Point Sequence:
TCTTCTTGGAAT
Flanking Amino Acid:
EAAKKLEQSKEADIDSSDES
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
61.2
0.28
1
58.8
38.1
Major PPT
69.3
0.44
1
63.8
41.8
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
58.9
0.36
1.6
76.72
40

Associated Gene:

Gene:
CPSF2
Ensembl Gene ID:
ENSAPLG00000006330
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006614
47724695 - 47741210
16516