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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47733920_47734566_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47733920 - 47734566
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
TTTCATCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGATTATTAAAA
Flanking Amino Acid:
IKWDEYGEIIKPEDFLVPEL
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.4
37.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.4
0.69
0.7
78.4
30
Minor 5ss
42.9
-0.8
2.5
50.7
40.2
Minor BPS
52.8
0.08
1.7
62.16
36.9

Associated Gene:

Gene:
CPSF2
Ensembl Gene ID:
ENSAPLG00000006330
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006614
47724695 - 47741210
16516