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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47734720_47735851_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
47734720 - 47735851
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTCAAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
CISATESMEIKARVTYIDYE
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
57
0.16
1
50.5
42.5
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
CPSF2
Ensembl Gene ID:
ENSAPLG00000006330
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006614
47724695 - 47741210
16516