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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47858971_47861025_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47858971 - 47861025
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
GCTTACATAACC
Flanking Amino Acid:
FVPSLEKICEKLHLSEDVAG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
82.5
0.73
0.8
73.6
36.3
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
58
0.23
1.8
69.46
41.3

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007256
47806261 - 47890572
84312
ENSAPLT00000033727
47806261 - 47892685
86425
ENSAPLT00000029904
47842903 - 47890108
47206
ENSAPLT00000029646
47857225 - 47890108
32884
ENSAPLT00000017489
47842903 - 47890108
47206