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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47863209_47863978_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47863209 - 47863978
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GTTGTCTAAAGC
Flanking Amino Acid:
VGVCGLFAGQVVCLTQWAVF
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
80.4
0.68
0.9
77.3
41.3
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
48.3
-0.1
2
61.92
43.9

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017489
47842903 - 47890108
47206
ENSAPLT00000007256
47806261 - 47890572
84312
ENSAPLT00000033727
47806261 - 47892685
86425
ENSAPLT00000029904
47842903 - 47890108
47206
ENSAPLT00000029646
47857225 - 47890108
32884