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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47864054_47865735_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47864054 - 47865735
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTACATTTATGT
Flanking Amino Acid:
YTLSVIVLIVFIYDEKIEWW
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.5
38.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
87.8
0.85
0.6
81.5
30.6
Minor 5ss
40
-1.1
2.9
57.4
41.1
Minor BPS
44.1
-0.3
1.9
60.06
43

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029646
47857225 - 47890108
32884
ENSAPLT00000017489
47842903 - 47890108
47206
ENSAPLT00000007256
47806261 - 47890572
84312
ENSAPLT00000033727
47806261 - 47892685
86425
ENSAPLT00000029904
47842903 - 47890108
47206