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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47866275_47867294_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47866275 - 47867294
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTTCAGACCG
Flanking Amino Acid:
IMYSFYILIMKYNVRMQNFF
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.9
0.79
0.7
81.9
28.8
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
45.4
-0.4
2
56.51
44.9

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033727
47806261 - 47892685
86425
ENSAPLT00000029646
47857225 - 47890108
32884
ENSAPLT00000017489
47842903 - 47890108
47206
ENSAPLT00000007256
47806261 - 47890572
84312