Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47867438_47872349_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47867438 - 47872349

Intron Length:

4912

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTGTGATCATTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

CTACAGCTAACT

Flanking Amino Acid:

DDPSIPLLCKVKGMQQYGKN

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

65.7

0.35

64.5

41.6

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

42.9

-0.4

2.4

64.29

45.2

Associated Gene:

Gene:

SLC24A4

Ensembl Gene ID:

ENSAPLG00000006958

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029646

47857225 - 47890108

32884

ENSAPLT00000017489

47842903 - 47890108

47206

ENSAPLT00000007256

47806261 - 47890572

84312

ENSAPLT00000029904

47842903 - 47890108

47206