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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47872520_47874534_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47872520 - 47874534
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTACACTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTGTCTTTTACA
Flanking Amino Acid:
RMASRLIINERQRLIQSANG
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
72.8
0.57
1
81
30.3
Major PPT
71.5
0.48
1
65.7
40.4
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
70.7
0.64
1.6
78.96
37.6

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029904
47842903 - 47890108
47206
ENSAPLT00000029646
47857225 - 47890108
32884
ENSAPLT00000017489
47842903 - 47890108
47206
ENSAPLT00000007256
47806261 - 47890572
84312
ENSAPLT00000033727
47806261 - 47892685
86425