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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47874680_47884756_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47874680 - 47884756
Intron Length:
10077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAAAAATAAACT
Flanking Amino Acid:
QDNLSPFSLPDGKMNKVKWI
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
62
0.3
1
62.3
30.4
Major PPT
83.3
0.75
0.8
77.4
31.4
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
43.9
-0.3
2
60.19
42.1

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029904
47842903 - 47890108
47206
ENSAPLT00000029646
47857225 - 47890108
32884
ENSAPLT00000017489
47842903 - 47890108
47206
ENSAPLT00000007256
47806261 - 47890572
84312
ENSAPLT00000033727
47806261 - 47892685
86425