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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47889917_47891656_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47889917 - 47891656
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
GCTTAATTAACT
Flanking Amino Acid:
ALLLGSVALTVFGIHVNKWK
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
62.7
0.48
1.8
79.32
42.1

Associated Gene:

Gene:
SLC24A4
Ensembl Gene ID:
ENSAPLG00000006958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033727
47806261 - 47892685
86425