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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47901323_47919916_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47901323 - 47919916
Intron Length:
18594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TCTGCTTTTACA
Flanking Amino Acid:
AGDKGARDDSGPSSDTSEDG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.1
0.59
1
72.5
42.4
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
60.6
0.33
1.8
70.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023022
47901276 - 47953862
52587