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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47920104_47924255_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47920104 - 47924255
Intron Length:
4152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AAGCTCTTGATT
Flanking Amino Acid:
GAILGKEAAGMFLVRKEGNV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89.4
0.89
0.6
87.7
22.3
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
58.5
0.35
1.2
66.9
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023022
47901276 - 47953862
52587