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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47924371_47941434_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47924371 - 47941434
Intron Length:
17064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
GAGTTGATGACT
Flanking Amino Acid:
LEYTIKEEKSILYLEGSVLV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
44
-0.3
2.2
61.05
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023022
47901276 - 47953862
52587