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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47941508_47944407_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47941508 - 47944407
Intron Length:
2900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTCTTTCATT
Flanking Amino Acid:
FKLVAFYCVSRDLLPFTLKL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
95
1.01
0.5
90.9
21.2
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
68.6
0.67
1.7
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023022
47901276 - 47953862
52587