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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47975036_47976145_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47975036 - 47976145
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACGTTTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TAATTATTAACA
Flanking Amino Acid:
AHCFNWHSPLYEYALRQLYA
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
77.4
0.62
0.9
74.2
39.6
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
67.4
0.54
1.5
74.71
35.9

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580