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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47976317_47977042_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47976317 - 47977042
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTAAAGT
Flanking Amino Acid:
IAAEMKTHLEAKEFIKESMR
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
78.5
39.2
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
49.6
0.05
1.9
68.84
42.9

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580