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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47980528_47981424_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47980528 - 47981424
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AATTTCTTAAGG
Flanking Amino Acid:
YMYHHKKYQKMVFYIEACES
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.2
0.63
0.8
72.6
37.1
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
64.4
0.32
1.7
66.52
41.2

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580