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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47981867_47983703_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47981867 - 47983703
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAA
U12 Branch Point Sequence:
TTTCTCTTTACA
Flanking Amino Acid:
KGVGSGKVLKSGPKDHVFVY
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
53.7
0.09
1.4
64.3
39.6
Major PPT
92.5
0.96
0.6
87.6
22.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
69.4
0.6
1.6
80.69
34.2

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580