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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47983790_47984823_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47983790 - 47984823
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTAATTTAAAT
Flanking Amino Acid:
AGVPKDYTKEDVTPKNFLAV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.4
0.44
0.9
66.4
39.3
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
64.7
0.54
1.6
83.29
37.1

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580