About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47984906_47985764_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47984906 - 47985764
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTAAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTCCCTTTAAAC
Flanking Amino Acid:
MMYDDIADNDENPTKGIVIN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.9
74.8
39.7
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
61.8
0.35
1.4
65.89
39.4

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580