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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47985863_47993574_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47985863 - 47993574
Intron Length:
7712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTCCATTAAAG
Flanking Amino Acid:
SNGWYNYRHQADVCHAYQIV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
79.2
0.66
0.9
70
40.5
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
56.6
0.07
1.8
63.72
43.4

Associated Gene:

Gene:
LGMN
Ensembl Gene ID:
ENSAPLG00000007964
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008300
47974177 - 47993756
19580