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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48013444_48014444_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48013444 - 48014444
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
TTTTACTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TATTTGTAAAAA
Flanking Amino Acid:
LIQRSKETQEELNKSRERVE
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.9
0.81
0.7
81.6
29.9
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
46.9
-0.2
2.3
65.11
41.3

Associated Gene:

Gene:
GOLGA5
Ensembl Gene ID:
ENSAPLG00000008788
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009171
48009219 - 48026576
17358