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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48015342_48016140_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48015342 - 48016140
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATGG
5'SS Class:
major
3'SS Sequence:
TTATTGCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTTCTTTATT
Flanking Amino Acid:
REQESYKQMQNEFAARLSKL
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
64.6
42.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.7
0.47
1
66.8
39.2
Minor 5ss
33.7
-1.9
2.9
39.7
45.7
Minor BPS
69.3
0.69
1.6
84.19
36.4

Associated Gene:

Gene:
GOLGA5
Ensembl Gene ID:
ENSAPLG00000008788
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009171
48009219 - 48026576
17358