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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48016345_48017505_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48016345 - 48017505
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTGTCAATAACA
Flanking Amino Acid:
YKQKATRILQSKEKLINSLK
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
84.6
33.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.8
0.85
0.8
85.9
33.1
Minor 5ss
47
-0.3
2.9
67.1
37.8
Minor BPS
55.6
0.17
1.9
69.57
42.4

Associated Gene:

Gene:
GOLGA5
Ensembl Gene ID:
ENSAPLG00000008788
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009171
48009219 - 48026576
17358