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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48017677_48018328_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48017677 - 48018328
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTATG
5'SS Class:
major
3'SS Sequence:
CTGTTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTCTGTTAATT
Flanking Amino Acid:
QIQQMRTELQDMETQQVSEA
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.7
44.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.9
0.63
0.9
74.6
39
Minor 5ss
43.5
-0.7
3
59.2
45.4
Minor BPS
58.9
0.36
2
79.24
37.1

Associated Gene:

Gene:
GOLGA5
Ensembl Gene ID:
ENSAPLG00000008788
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009171
48009219 - 48026576
17358