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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48020471_48021513_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48020471 - 48021513
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTGTTCTGATTT
Flanking Amino Acid:
EEEIQKLRNQLTNKALSSSS
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.8
0.8
0.7
84.6
30.3
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
51.3
0.12
1.7
69
42.3

Associated Gene:

Gene:
GOLGA5
Ensembl Gene ID:
ENSAPLG00000008788
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009171
48009219 - 48026576
17358