Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48021740_48022987_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48021740 - 48022987

Intron Length:

1248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTCAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTTCCTTCAAAT

Flanking Amino Acid:

INMSGIDGAEGARMRNVPVL

Intron Amino Acid Position:

655

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.11

0.7

90.9

28.7

Major BPS

81.8

0.79

1.1

34.5

Major PPT

69.1

0.43

0.9

66.6

33.3

Minor 5ss

37.5

-1.4

2.8

51.6

44.9

Minor BPS

64.3

0.53

1.6

83.38

37.1

Associated Gene:

Gene:

GOLGA5

Ensembl Gene ID:

ENSAPLG00000008788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009171

48009219 - 48026576

17358