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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48023094_48024424_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48023094 - 48024424
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TACACTTGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
TTTCCCTTACAC
Flanking Amino Acid:
RKAASSIDQFSIRLGIFLRR
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
66.5
0.37
1
61
39.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
65.1
0.45
1.7
77.42
38

Associated Gene:

Gene:
GOLGA5
Ensembl Gene ID:
ENSAPLG00000008788
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009171
48009219 - 48026576
17358