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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48035051_48045223_R

Intron Information:

Intron Rank:
136742
Intron Class:
major
Intron Phase:
Intron Coordinates:
48035051 - 48045223
Intron Length:
10173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCAGACATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.9
0.56
0.9
71.9
38.2
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
48.6
-0
1.9
66.62
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021045
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017515
48034546 - 48052494
17949