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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48075535_48076686_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48075535 - 48076686
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGCA
5'SS Class:
major
3'SS Sequence:
CATCTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGGCATCTCATT
Flanking Amino Acid:
EEGSANRRTEDQELESLAAI
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
38.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.9
0.61
0.9
70.1
34.6
Minor 5ss
27.9
-2.5
3.1
33.2
41.8
Minor BPS
40
-0.7
2
55.61
40.7

Associated Gene:

Gene:
CHGA
Ensembl Gene ID:
ENSAPLG00000009162
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009553
48071869 - 48076770
4902