About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48094163_48095453_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48094163 - 48095453
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTTCCACTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTTTTTCCACT
Flanking Amino Acid:
CPSGIPYRALLDKIEGVFER
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
67.4
39.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
80
0.68
0.7
74.7
29
Minor 5ss
26.3
-2.7
2.9
27.4
37.8
Minor BPS
51.9
0.14
2
74.97
42.5

Associated Gene:

Gene:
ITPK1
Ensembl Gene ID:
ENSAPLG00000009367
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009768
48088033 - 48188580
100548