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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48095523_48095639_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48095523 - 48095639
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CTCTCCTTCACA
Flanking Amino Acid:
KPESSSVLTAAEVCLVQRTS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
68
0.56
1.8
74.7
43.3

Associated Gene:

Gene:
ITPK1
Ensembl Gene ID:
ENSAPLG00000009367
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009768
48088033 - 48188580
100548