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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48102568_48104452_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48102568 - 48104452
Intron Length:
1885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TATCTTTATCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTATCC
Flanking Amino Acid:
IEKNGLAFPFICKTRVAHGT
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
70
35.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.1
0.7
0.9
73.9
40.5
Minor 5ss
43.3
-0.7
2.5
56
42.5
Minor BPS
71.3
0.65
1.5
79.09
36.3

Associated Gene:

Gene:
ITPK1
Ensembl Gene ID:
ENSAPLG00000009367
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009768
48088033 - 48188580
100548
ENSAPLT00000041172
48087875 - 48188580
100706