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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4810386_4811057_R

Intron Information:

Intron Rank:
133535
Intron Class:
major
Intron Phase:
Intron Coordinates:
4810386 - 4811057
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCACCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTGTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
69.9
0.45
0.8
67.4
33.8
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
52.3
0.15
1.9
71.18
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019110
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031334
4810244 - 4811488
1245