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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4813684_4815128_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4813684 - 4815128
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GTGATCTCACTC
Flanking Amino Acid:
SPRSNCSDGMMEYSGPPCSS
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
84.4
0.77
0.7
76.2
32.3
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
44.8
-0.4
1.8
51.42
40

Associated Gene:

Gene:
MYOD1
Ensembl Gene ID:
ENSAPLG00000005673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005867
4812187 - 4816696
4510