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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4815208_4815836_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4815208 - 4815836
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTGGATAAATT
Flanking Amino Acid:
DSSYYTESPNDPKHGKSSVV
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
76.3
0.59
0.9
73.8
36.9
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
44.4
-0.3
2.3
66.91
44.3

Associated Gene:

Gene:
MYOD1
Ensembl Gene ID:
ENSAPLG00000005673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005867
4812187 - 4816696
4510