About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48152922_48188511_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48152922 - 48188511
Intron Length:
35590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CACATTTTAACA
Flanking Amino Acid:
FRKRGVEVVQLDLTKPLEDQ
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.7
0.67
0.9
77
37.3
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
58.7
0.27
1.3
60.18
40.2

Associated Gene:

Gene:
ITPK1
Ensembl Gene ID:
ENSAPLG00000009367
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041172
48087875 - 48188580
100706
ENSAPLT00000009768
48088033 - 48188580
100548