About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48225408_48225697_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48225408 - 48225697
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GACCTCTGAAAT
Flanking Amino Acid:
SHRLFELYTKRNFRCDCGNS
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
83.7
0.76
0.7
76.5
32.1
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
49
0.01
1.5
61.73
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020657
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028622
48224558 - 48234021
9464