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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48301147_48307992_F

Intron Information:

Intron Rank:
144048
Intron Class:
major
Intron Phase:
Intron Coordinates:
48301147 - 48307992
Intron Length:
6846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCTCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.3
0.71
0.9
76.5
37.5
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
46
-0.2
2
68.41
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027653
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030046
48300665 - 48308992
8328