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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48301147_48308344_F

Intron Information:

Intron Rank:
144049
Intron Class:
major
Intron Phase:
Intron Coordinates:
48301147 - 48308344
Intron Length:
7198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
CATCCCCCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
74.2
0.54
0.8
65.7
36.1
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
44.7
-0.3
2.1
64.3
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027653
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032712
48300665 - 48310116
9452