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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48309767_48319801_R

Intron Information:

Intron Rank:
135973
Intron Class:
major
Intron Phase:
Intron Coordinates:
48309767 - 48319801
Intron Length:
10035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.5
0.64
1
74.5
39.4
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
61.5
0.44
1.9
84.92
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020585
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031572
48307000 - 48320056
13057