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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4834384_4917326_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4834384 - 4917326
Intron Length:
82943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TACTGTTTAACG
Flanking Amino Acid:
EDPYSSRYARYVAFASLFFI
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
60.6
44.5
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
38.7
-1.3
3
44.2
43.2
Minor BPS
60
0.18
1.9
63.93
44.3

Associated Gene:

Gene:
KCNC1
Ensembl Gene ID:
ENSAPLG00000005789
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019425
4833645 - 4932483
98839
ENSAPLT00000005993
4833645 - 4935858
102214
ENSAPLT00000032764
4833645 - 4933537
99893
ENSAPLT00000025632
4833645 - 4952407
118763